rs33601863 SNP Detail

Summary

• ID
  rs33601863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31898120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT GTAACTAGCA TTTTGCTGAC
  R
  ACCAGGCAGC TTATGCTAAG TCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39556164	mCV24384275	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145462673	ENSMUSSNP6162612	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss325359844	CHEV_17_31816091	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33601863					SNP	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31898120 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Rr525551	regulatory region 525551	1904 bp proximal
Tssr143680	transcription start site region 143680	1207 bp downstream
Tssr143681	transcription start site region 143681	212 bp downstream
Tssr143682	transcription start site region 143682	423 bp upstream
Tssr143683	transcription start site region 143683	493 bp upstream
Tssr143684	transcription start site region 143684	1856 bp upstream
Tssr143685	transcription start site region 143685	1896 bp upstream
Tssr143686	transcription start site region 143686	1997 bp upstream
Tssr147305	transcription start site region 147305	1022 bp upstream
Tssr147306	transcription start site region 147306	980 bp upstream
Tssr147307	transcription start site region 147307	952 bp upstream
Tssr147308	transcription start site region 147308	606 bp upstream