rs33602135 SNP Detail

Summary

• ID
  rs33602135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11820999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTAGA GTGCTTGCCT
  TGGTAGTGTG TGCACAGTCC CAGGTTTCAG CAATGGATAC AATTGATAAA TCAAACCCTT
  TACAAACTAG GAATTTGAAA AAGCTCACTA ATGGAATGTT TTACTCAATA AAGCAACCTT
  ACAGACATGG GGAACGATTA TATTTATACA TACAAACAGT AATACTCACG TACCTTCATA
  Y
  GTACAGATTG TTGCGCTTAG GTGTGGATCT GAGGACCCCA GGAAGGGCAG GAACATTAGG
  CATTGCAGTA ATGGGGCTTT GGTATCAATG GCATGTCAGG AGGCAGCAGG AAAAGGAGCC
  TGTGACAACC CTATCCAGAG AGGTGTGGCG TGGCAAATAG CATTTACTGC ATTGCTCTGG
  AAGCCAAGTT TGCCTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46833669	NES10978248	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33602135					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833669	NES10978248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11820999 () rs orientation: forward

Symbol	Name	Function Class
Rr5319	regulatory region 5319	1002 bp proximal
Rr394732	regulatory region 394732	1716 bp upstream