rs33603017 SNP Detail

Summary

• ID
  rs33603017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11822171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATGAT TCCTATCCCA
  AAAGTGGAAA GGTGTTCCTT CTGGATGGGT CACGTCTGGG GCCAGCAGGG GTGACTGACT
  CACTCTAGGT CTCCACCCCA GGCCCACTGG CCCTGGTGGC AGGGCCTTTT GTCTGTCCCT
  TGTGTTTCTT TGTCAAATGA TCTCCTTCAA CCTTAACACT CTTGGAGGTT TTCTTAACAA
  R
  GCTAAATCTA TGTGCCTCCC TAGGACTCCC AAGCCATAGG CCTCTCCGTT CCCAGAGGCC
  TCCCCTTCCC AGAGCCTACT CACCACCAAA GCATTTATCA GGGGGGTCTG ATGGGCTTTA
  ACAGACAGGA ATCAGCCCCT GACTGCAGGT TGGCAAGGCC AACTCTGGTG ACACTATGTT
  CATGTGAACA AGAAGTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46833681	NES10978252	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33603017					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833681	NES10978252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11822171 () rs orientation: forward

Symbol	Name	Function Class
Rr5319	regulatory region 5319	within coordinates
Rr394732	regulatory region 394732	544 bp upstream