rs33604081 SNP Detail

Summary

• ID
  rs33604081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12056643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCAATG CCCAGCTCTG
  CGTTCCTCTT TCTCCTCTCT TGGGATGCCT GAGGGCTTCC CCAGGTGAGC CTGCGGCCCT
  GCAGCTCCGG CCTGCACCAC AGGTGCTGAG CAGGACCAGA GATCAGCCAG AGCTTGGAGC
  AGCTTCCTCA GGCAAGGCCC ACAGGCAATT TCAGGAGGAC AGGTGAGTCT TGGGGCTAAG
  R
  CCTACTCCAT TCCCTTTGCA GCTCAGCTTT TCCAGCACAG GTTCTCAAAG AGATCAAGCT
  CTGAAGGTAG CAGAAAAGAC CAGGATGCCA TTTGGAGGAC CATTGTCTGC CTCCTTACAG
  CTGGCGTGTC CTCCTCACTC TATTCTGCTT TGTTTCAAGA TAAAGGCCTA TGATAATGGT
  GCTTCTGCCC CCCCCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46834539	NES10972717	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33604081					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46834539	NES10972717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12056643 () rs orientation: forward

Symbol	Name	Function Class
Rr5326	regulatory region 5326	1958 bp proximal
Rr9088	regulatory region 9088	643 bp distal