rs33605347 SNP Detail

Summary

• ID
  rs33605347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91449434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGGTA TACCCCTAGT
  CCCTACTACC CTGCATCCCC AGCTGGGATA TCATGGGGGT CTGGGTGTTG ATGGCCTGTG
  TCCCTCCCCA TCTTCTTCCT GACATCAAAC ACCAGCAACT CCTAGAGAGG GATGAAGTCC
  TTCTCCAAAC CAGGTGCCTG GCCACCAGGA CCTTCCCCCT GACAGGAGGA CACTAGCTTG
  K
  TGGAACCCTC AGTGAGAGAC AGCTTGGGAC CCCATTAGTG ATAAAGACCT GTGAGCAGTT
  AAAAAAAAAA AAAAAGTAGC TCTTGGTGTG TTTTTCCTCC CTTAATTTTT GTTTGGTACA
  TTTGGGTGTT TGCGTGTACT GAGCCACACA TGTGTGGTTG GGGCTGAGGA AAGCAAGAGG
  AGGAAAGTCT TGGGTCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48333148	NES12276036	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33605347					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333148	NES12276036	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91449434 () rs orientation: forward

Symbol	Name	Function Class
Gm36712	predicted gene, 36712	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139425	transcription start site region 139425	846 bp downstream
Tssr139426	transcription start site region 139426	769 bp downstream