rs33605351 SNP Detail

Summary

• ID
  rs33605351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91448290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTTTTA ATCATAACAA
  TTATATTTTT TTCTTTTTCT TTCTTTATTT TTTTGGGGGT GGATGGGGGA CGGGTTTTCT
  GTGTTGTCCT GGAACTTTCA ATGTAAACCA GGCTGGTCTT CAACTCAACA GGGATCCTCC
  TGCCTCTGCC TCCTGAGTGC TGAGGGAGGG CTGGGATTAA AGGCCACCAC TTGTAGCTTA
  Y
  CTTATTTTGA AAACACAGTT GGACGTCTGA TTTTAAAAGT TCTTTAACTG TCTTAGTTCT
  TGAAACTTTA TGTACTAATG GCAAACATCT GAAATAGAAA ATCTTGAGGC TTATGGGTAG
  CATAATATAA TGTAAGATCA TGTTAATTAC GTTATTAATG TCGAATTACC GATTTATTAT
  AGTATGATGG AAGTATTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48333153	NES12276031	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33605351					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333153	NES12276031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91448290 () rs orientation: forward

Symbol	Name	Function Class
Gm36712	predicted gene, 36712	366 bp upstream
Rr325570	regulatory region 325570	1689 bp distal
Son	Son DNA binding protein	within coordinates
Tssr139425	transcription start site region 139425	276 bp upstream
Tssr139426	transcription start site region 139426	344 bp upstream