rs33605353 SNP Detail

Summary

• ID
  rs33605353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91445325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA CCTTAAAACT TCTTTATTAT
  W
  GTACGCTTGC GATCGTTTGG CCACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	MOLF/EiJ
ss48333155	NES12276262	PERLEGEN	MM_PANEL2	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	MOLF/EiJ
rs33605353					SNP	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333155	NES12276262	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91445325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	43 bp distal
Gart	phosphoribosylglycinamide formyltransferase	1485 bp upstream
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	578 bp downstream
Rr404967	regulatory region 404967	411 bp upstream
Son	Son DNA binding protein	within coordinates
Tssr139422	transcription start site region 139422	1331 bp downstream
Tssr139423	transcription start site region 139423	579 bp downstream
Tssr139424	transcription start site region 139424	532 bp downstream
Tssr142101	transcription start site region 142101	1477 bp upstream
Tssr142102	transcription start site region 142102	787 bp upstream
Tssr142103	transcription start site region 142103	723 bp upstream