rs33605523 SNP Detail

Summary

• ID
  rs33605523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4267736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAAGGG ATAGGCTGGG
  CCTTGGCAAC CAGTAGGGCG GGATCATTGT GCCTCTGGCC CACCAACCAA TCCAGCCATT
  TTGTGTGCCC TGGTCCTCTT TTCCTGCACT TGATGACTAT GGAGGCTAGA TAGTCCTGCG
  ACACCTGTGC CAGGTCACCT ATTTTGTAAC TTTGACTTTT CTCACAGCCC TTACCTGATA
  Y
  GGTTGGTGGG AGAATGAGAA CCCTGGGAGT TACTTTGTAT TACATTTTAT TTGGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTCCT TGTGCACATG TCACTGCATA
  CTGGTAAAAG TCAAAGAACA ACTTGTAGGG CTCAGTTCAC TCCTACAACC AGTGGGTCCT
  GGAGATAGAA TCCAGGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46296253	mCV23160193	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148555678	ENSMUSSNP6717984	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33605523					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4267736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	293 bp distal
Prr36	proline rich 36	277 bp upstream
Rr658993	regulatory region 658993	within coordinates
Tssr80255	transcription start site region 80255	1725 bp upstream
Tssr80256	transcription start site region 80256	733 bp upstream
Tssr80257	transcription start site region 80257	693 bp upstream
Tssr80258	transcription start site region 80258	610 bp upstream
Tssr80259	transcription start site region 80259	568 bp upstream
Tssr80260	transcription start site region 80260	484 bp upstream
Tssr80261	transcription start site region 80261	435 bp upstream
Tssr80262	transcription start site region 80262	233 bp upstream