rs33606457 SNP Detail

Summary

• ID
  rs33606457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137850609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACTGTTC CTCCCCTAGG AAATGTGAAA
  ATCCAGTGAA GTCATCAGAC TTGCCATATA TATAGGCACA CCGCCTGTTT TTAAGAGTGA
  TTGGTACTTA GGGAGGGAAT TAAGAATCTC TAGACCCAGG CAGAGGTGTT TTGCCTGCTC
  M
  TCTGTAGGTG GGCGTAAGCA TGTCCCATCA CCCTGAAAAG CAGAACTGAA AACTCTCTGG
  AGCAGCTGCA GCCCACGCCA AATGGTGTAG CACCCATTCA ATTCAAGAGC TGCCCGCGCA
  TTCTCTCATT TTCTGCGAAG GAAAGCATGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49506916	NES12870035	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	C	A	A		C	A	A	C		A
ss319999473	CHEV_1_139819448	CHEVERUD	SCREENING_POP	f	SNP									A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33606457					SNP	A	A	A	C	C	C	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49506916	NES12870035	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137850609 () rs orientation: forward

Symbol	Name	Function Class
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm37124	predicted gene, 37124	1517 bp upstream
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Rr396330	regulatory region 396330	within coordinates
Rr419641	regulatory region 419641	within coordinates
Rr419642	regulatory region 419642	1004 bp proximal
Tssr9118	transcription start site region 9118	1971 bp downstream