rs33606458 SNP Detail

Summary

• ID
  rs33606458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137850350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGGGAA ATTAACAACA
  TGACATGAAA ATAAAGAAAG TATTTTGGTA AATACAGTGT ACTGCTAATT ACTACTATAA
  TCCACAGTGT TAGGAAAAAT TTTCTTTTAA AACATATTAC TTCATGATGA ATGATAAAAG
  AAAATATGAC TAAAGGAAAA AGTAAATTTA ATTTCAATGG TATTGCTTTG AGCATTTTAG
  Y
  GAAATAACTT TTAGTCTAGA ACTATAGGAG TTGGTATGAT AACCAGAGGG TGGAGGCAGA
  ATTTTGTCCT CCAATACCCC TGTTCTTCTT TGATATAAAG GACTAAAGAT GACTGTTCCT
  CCCCTAGGAA ATGTGAAAAT CCAGTGAAGT CATCAGACTT GCCATATATA TAGGCACACC
  GCCTGTTTTT AAGAGTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49506917	NES12870033	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33606458					SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49506917	NES12870033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137850350 () rs orientation: forward

Symbol	Name	Function Class
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm37124	predicted gene, 37124	1776 bp upstream
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Rr396330	regulatory region 396330	204 bp upstream
Rr419641	regulatory region 419641	179 bp proximal
Rr419642	regulatory region 419642	1263 bp proximal
Tssr9117	transcription start site region 9117	1918 bp downstream
Tssr9118	transcription start site region 9118	1712 bp downstream