rs33606571 SNP Detail

Summary

• ID
  rs33606571
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105281204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAACTC AAGTTAGAAT
  AAGGGCAGAT TCATCCTGGG ATGCTGAGGA GAGGGATGGA GACAAGCAGA GGTAAGACCA
  GCCATGTAGG TGAACGCAGG TTAGAATAAT TGGGATAATA AGTTAAGAGC AAGTTTGAGA
  ACAAACTTCA GCTTGTGACC CAAGCATTTA TTAAATAATT AGTCTCAGAC TTGTTATTTT
  K
  GGGAATTAAG TGGCCAGGAA GGGGAAAAAC AAACTTGGAT TGTTTTATAT AGGCTATTTC
  TCTAGGAACA CAACAGAAAC CCTTTTTCCT ATAGATTGTT TTGTTGCTGT TGTTGTAGTT
  ATTATTATTG TTGTTCATGG TGGTGTTGGT ATTTCTTTTT CAGCTCTCAA AGACTAAACA
  ACAAACCAAA GAGTACACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45799495	mCV23375055	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss148989003	ENSMUSSNP4374686	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33606571					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105281204 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1552 bp upstream
Tssr52268	transcription start site region 52268	1952 bp upstream
Tssr52269	transcription start site region 52269	1877 bp upstream
Tssr52270	transcription start site region 52270	1715 bp upstream
Tssr52271	transcription start site region 52271	1597 bp upstream
Tssr52272	transcription start site region 52272	1534 bp upstream
Tssr52273	transcription start site region 52273	1456 bp upstream
Tssr52274	transcription start site region 52274	1425 bp upstream
Tssr52275	transcription start site region 52275	1400 bp upstream
Tssr52276	transcription start site region 52276	1366 bp upstream
Tssr52277	transcription start site region 52277	1350 bp upstream
Tssr52278	transcription start site region 52278	1323 bp upstream
Tssr52279	transcription start site region 52279	1261 bp upstream
Tssr52280	transcription start site region 52280	1210 bp upstream
Tssr52281	transcription start site region 52281	1179 bp upstream
Tssr52282	transcription start site region 52282	1162 bp upstream
Tssr52283	transcription start site region 52283	1076 bp upstream
Tssr52284	transcription start site region 52284	1019 bp upstream
Tssr52285	transcription start site region 52285	987 bp upstream
Tssr52286	transcription start site region 52286	957 bp upstream
Tssr52287	transcription start site region 52287	942 bp upstream
Tssr52288	transcription start site region 52288	928 bp upstream
Tssr52289	transcription start site region 52289	848 bp upstream
Tssr52290	transcription start site region 52290	741 bp upstream
Tssr52291	transcription start site region 52291	399 bp upstream
Tssr52292	transcription start site region 52292	69 bp downstream
Tssr52293	transcription start site region 52293	239 bp downstream
Tssr52294	transcription start site region 52294	336 bp downstream
Tssr52295	transcription start site region 52295	654 bp downstream
Tssr52296	transcription start site region 52296	1276 bp downstream
Tssr52297	transcription start site region 52297	1354 bp downstream
Tssr52298	transcription start site region 52298	1447 bp downstream