rs33607771 SNP Detail

Summary

• ID
  rs33607771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTGCCCAGA AGGTCTTGTG GTTTTGAGAG TTGAGGTTCT GAGCAGCCTG GACTTGCTCA
  AGGTTGGCAG ACCACAGCCT GCGACAGACA CAATGCTTGT GAATGAGGTT CACCTATATA
  TTTGGGGTTA ATAAGACACC CACCCATGTG CTTGGAGTTA GGAGCCCTTG AGTGGCCAGC
  GCTCCAAGGG GCCGTTCTAG ATGGGGCTCG AGTGGTTGGG TTTGACTTGG TCACCTTGGA
  TTCTCTGGCA GTTACGAGTG TCATGGGGAC CCAGGGCAGG AGTGGGCCGG GGGGGGGGGG
  S
  CATTGAGTGG GAGGAGCTCA TGGGGTGCGG GAAGGGGTCG GGCAGGGGCC ACCTCGGTCC
  AGGAAATGCA GCCGCTGCAG GTTGAAGGGG ATGCCGACCA TCAGGTCCAG CTCTTCTTTG
  AGCTCCCGCA CTGTCATGTC GTTGCGGCAG TTGGCCACGC GGAACAGCTC CCCAGTCTCC
  TCCAGCTTCA CCCGCAGGAC ATAGACGTCA GGAGTCAAGT CTGGCGACAC GGTGGAGGCA
  AGCGGGTCCC CTGTGTGCCC CCTAACCTGT GCGCGGGCCC TGCTGGAGGG CTGAGTGTGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45298779	mCV22939392	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33607771					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419730 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	2 bp upstream
Rr571985	regulatory region 571985	within coordinates
Rr571986	regulatory region 571986	251 bp proximal
Tssr27995	transcription start site region 27995	234 bp downstream
Tssr27996	transcription start site region 27996	251 bp downstream
Tssr27997	transcription start site region 27997	266 bp downstream
Tssr27998	transcription start site region 27998	278 bp downstream
Tssr27999	transcription start site region 27999	363 bp downstream