rs33608247 SNP Detail

Summary

• ID
  rs33608247
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACATTTGGG GAGCCTCCCT TCTGGTCCTC ATGAGACATG TCAGGGACTA TGACACCTAA
  TACCCACATC TTAGATAGAT GTATGTAGAG CTTGTTAACT TAGTTAGAAT GGCTAGCCAG
  CAAGCCCTAG AGGGCCTCCT GGCCTAAGCT CTCCAGAGCT AACTAGGATG ACAGGTACTG
  CTCCTGACTT TGTTATGTAT GAGTACTGAA GCTAGAACTC AGGCCTGCAT GACAAGTACT
  TTACCTACTG AGAAATCTCT CTAGTCCCCC CCAACTAAAT TTTAACAGTT TATAGTCAAA
  M
  TGGGTATGGT GGTATACACC TGTAATGCCA GCACTCAGAT GGCTGAAGCA GTAGAACTGT
  TGAATCCCAG CCTGGGCTAC ATAGTGAGAA ACTGACTTAA AATAAACAAA AAACAAAAAA
  GGAAAGGAAA GGAAAGGGAA AGGGAAGAAA AAGAGAGGGG GAGTGGGGAG AGGAGAGGAG
  AGAAGAGAGA AGAGAAAAAG AAAAGCAAGC AAGCAAGCTA AACTAATGGT GGCACACACC
  TGTAATCTCA GCACATGGGA GGCAGAGGCA GAAGGTTATC CTCAACTATA AAGCAAGTTT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39557055	mCV24098837	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss145493369	ENSMUSSNP4965663	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss325366947	CHEV_17_33776059	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33608247					SNP	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159841390	UOL_MMUSEQ_9951	UOL_CGR	Mmu17_30637692_36837814	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858088 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	379 bp upstream
Tssr143785	transcription start site region 143785	1302 bp downstream
Tssr143786	transcription start site region 143786	1284 bp downstream
Tssr143787	transcription start site region 143787	1004 bp downstream
Tssr143788	transcription start site region 143788	991 bp downstream
Tssr143789	transcription start site region 143789	973 bp downstream
Tssr147440	transcription start site region 147440	797 bp downstream