rs33609603 SNP Detail

Summary

• ID
  rs33609603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12054427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTTATA AAGTGCTTGG
  TTGCAGGGTC CAGGGTTCTT AGCTGCAAAA CCACAACTTC TTATTGGTAG TGCTGGAGGA
  CACTGATGTA GCTCTAGTGT GTCAACTTAG TTCTAGCTAG GGTACTGGAG TCAGAGCTGA
  ATTGAAGCCC CAAATTCTAC AGGGGATAGT CACTTTTTCT TGGTCATAAT TTGGCATGCA
  R
  AGATCAGGGC TCTTGCTTTT CCCAGACTGG AATGATCTTG GATCTTAAGC CCTATTTCCA
  CTGGTGGTGG GAAAGGCAAG GAAGTCACCC CTACCCATCT TAGGTATTGG CACTGTTACA
  GTAGTGCCTT TCAGGGTGAC TCTCTCTCAC CCCCACCACT CTGTCCTTTC TCCTGGGGTA
  ACTAAGCTCA TTCTCTAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46834518	NES10972815	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33609603					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46834518	NES10972815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12054427 () rs orientation: forward

Symbol	Name	Function Class
Rr9088	regulatory region 9088	1374 bp proximal