rs33609674 SNP Detail

Summary

• ID
  rs33609674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23893507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT CCCTGCCTCT ATTCTTCTCC
  R
  GTCTTTCCCC CAGGGAACCT TTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39556971	mCV24340143	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145330306	ENSMUSSNP3467293	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss325326753	CHEV_17_23811500	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33609674					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23893507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	420 bp distal
Cpgi8683	CpG island 8683	1907 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	within coordinates
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	788 bp downstream
Thoc6	THO complex 6	651 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	912 bp downstream
Tssr142940	transcription start site region 142940	881 bp downstream
Tssr142941	transcription start site region 142941	546 bp downstream
Tssr142942	transcription start site region 142942	532 bp downstream
Tssr146635	transcription start site region 146635	956 bp upstream
Tssr146636	transcription start site region 146636	646 bp upstream
Tssr146637	transcription start site region 146637	526 bp downstream
Tssr146638	transcription start site region 146638	1318 bp downstream