rs33609675 SNP Detail

Summary

• ID
  rs33609675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91401215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TAATCAGGCA TGCTCAGTAG
  R
  CATTTCTGTG CCTGGTGAGA AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39556973	mCV24794263	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss60293385	NES15791746	PERLEGEN	MM_PANEL2	f	SNP		G			A		A	A		G
ss146219208	ENSMUSSNP3695823	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss325511788	CHEV_17_91493127	CHEVERUD	SCREENING_POP	f	SNP						A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33609675					SNP	G	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293385	NES15791746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91401215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	818 bp distal
Nrxn1	neurexin I	716 bp upstream
Rr334029	regulatory region 334029	615 bp distal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	965 bp upstream
Tssr149871	transcription start site region 149871	929 bp upstream
Tssr149872	transcription start site region 149872	910 bp upstream
Tssr149873	transcription start site region 149873	792 bp upstream
Tssr149874	transcription start site region 149874	758 bp upstream
Tssr149875	transcription start site region 149875	710 bp upstream