rs33610397 SNP Detail

Summary

• ID
  rs33610397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119576288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC TGTTATAGAG GCCGAGAACA
  M
  GATGGAAACT AAAGACAGCA AAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45299160	mCV22556936	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147341117	ENSMUSSNP1855550	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320477118	CHEV_2_119571543	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33610397					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119576288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	867 bp distal
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563573	regulatory region 563573	1268 bp distal
Rr563574	regulatory region 563574	195 bp distal
Rr563575	regulatory region 563575	725 bp distal