rs33610708 SNP Detail

Summary

• ID
  rs33610708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128814518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGGGA GTTAGCATCT
  TTACTATTCT TAAGAACTTC ATGCAATAGC TTTTTTGTTG TTGTTGTTTT GTTTTGCTAG
  CTGGAACAAG TTTTTGTCTC TAACCTAGTG TCTAACCTAG CTGCCTTGCT GGGCGAATGG
  GATCTGTATC TTAAGCTCTT CTCACTGGGC TAGGTGTGTG GCTCTTTTCT TGTAGGAGTG
  W
  CCCCCACCAG CATCCAGCCT GCGGCAGTTG TAGGACTGGA AGGAGGCCAA GCTGAACACC
  TGAGCTGACT GGGTGAGCAG CCCAGAGACA GAATTATTAT TACAGGGCCA ACCTCTGCAT
  GCCACTCAGA CAGCCCGCCA GCACTGGTTC TGACAGGGCT CTGGGGTAGG AAGAGGAGAC
  TTCCTTTCCT TCAGAGGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45799736	mCV23759934	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss149244960	ENSMUSSNP2191366	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss321688017	CHEV_5_129243329	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33610708					SNP	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128814518 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1425 bp upstream
Cpgi16665	CpG island 16665	1052 bp distal
Gm71554	predicted gene, 71554	1393 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	1293 bp downstream
Tssr48983	transcription start site region 48983	1361 bp downstream
Tssr48984	transcription start site region 48984	1322 bp downstream
Tssr48985	transcription start site region 48985	1267 bp downstream
Tssr48986	transcription start site region 48986	1207 bp downstream
Tssr53471	transcription start site region 53471	1436 bp upstream