rs33612550 SNP Detail

Summary

• ID
  rs33612550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137852694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGATACA CAGAGCCACC
  ACTACAGTCT TAGTACTTTC CTAGACCAAG AAGATGATTT GGTGTGACAA TTATGCACAA
  GGCCTTTTGT GGTTCTCTTT TTAAAATATA CTAAATTTCC CCTGTTAGCC TCTTTGAGGG
  TCTTAACCAT TATGTTCTAC TGGCGTCAGC GCAAGGAAGA ACCGTTGTCA CAGCCATCAA
  Y
  AGTTCTACAC AACCTGAGAA ATCAGCCTAA CCAGGTCTTG GTGGCTTTGA TCACTCTACT
  GAACACTAAC TCACAGCAAC TACATACTTC TTAGGACAAA GGATTTTCAC AAATGAACAT
  CTTTAAATAT TACAGCATGA GCATACGACA GAGTGAATGA TCCTGTAAAA AATAAATAAT
  TTTAATTTCT TCTTCCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49506899	NES12869784	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33612550					SNP	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49506899	NES12869784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137852694 () rs orientation: forward

Symbol	Name	Function Class
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm37124	predicted gene, 37124	within coordinates
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Rr396330	regulatory region 396330	1839 bp downstream
Rr419641	regulatory region 419641	1863 bp distal
Rr419642	regulatory region 419642	866 bp distal
Tssr9119	transcription start site region 9119	52 bp downstream
Tssr9120	transcription start site region 9120	32 bp upstream