rs33612705 SNP Detail

Summary

• ID
  rs33612705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA GGGCTAGGTG AATGCCCCAT
  Y
  CTGCACACCC TCCTTCCCTT TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45300102	mCV23740769	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148233545	ENSMUSSNP55657	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320607187	CHEV_2_164773450	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33612705					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1138 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	110 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	112 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	875 bp downstream
Tssr21689	transcription start site region 21689	202 bp downstream
Tssr21690	transcription start site region 21690	281 bp upstream