rs33612790 SNP Detail

Summary

• ID
  rs33612790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152538216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAGAGAGG AAGCCATTAG GGGCTGAGCA GGGGGATTGC TTCCCCTCTT GTCTGACGGG
  CACAGTGCAC TTGCCAGGCT CTGTAACCTG AGAGAGCTCA TGAGGAAGCC TGAGCCGAGG
  TGCCACCCAG CGAGTGGGTC CTAGAGCCGG GACTCGGCCT GGGACAGTAT AAAAACCAGG
  CCTGGGCTGC AGGAACAGCA TGAGGGCTGG AGGCTGAGGG CGTGCCGGTG TCGGTGGGAA
  TCCAGACTCG TCTAGGGGAG GCAGGCCAGG TCACAGCAGC TCCAGGCTCT GATTTCCTTA
  R
  TCGTTAGTGA AAGCAGAAAG GGGAGTGGCT TAAGGATGGA ACAGACTATA CCTAGATACC
  CCATGCCCAG CACAGCCTTG CCTTCTGTGA GGTCAGTTGC CCACACCCAA AAATATTGAA
  TGGAAAACTC CGGTTTTAAA TGCCATGCAT TCTGAATACC AAGATCATGC TTACTGTCCA
  CATGAAGCCT TCCTTGATCC AGCGCATCAC ACTGCGTACT GCTAACCATT ACAGACTCTC
  ACGGCTCTCA CAACGTGCCG TGCTATACAG TTTTGAGGTG CCCTGAGGAT AAGGAGGAGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45300006	mCV27576191	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33612790					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152538216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			within coordinates
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567434	regulatory region 567434			1174 bp distal
Rr567435	regulatory region 567435			within coordinates
Rr567436	regulatory region 567436			377 bp proximal
Rr567437	regulatory region 567437			646 bp proximal
Tssr20823	transcription start site region 20823			1283 bp downstream
Tssr20824	transcription start site region 20824			820 bp downstream
Tssr20825	transcription start site region 20825			778 bp downstream