rs33613886 SNP Detail

Summary

• ID
  rs33613886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93034452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT CCAGTCTGAC AGGGCCAAGG
  R
  GCTCTGAGGC TGATGAACCT TTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45300015	mCV23016578	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss146939828	ENSMUSSNP801591	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33613886					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93034452 () rs orientation: forward

Symbol	Name	Function Class
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	156 bp distal
Tspan18	tetraspanin 18	mRNA-UTR
Tssr25280	transcription start site region 25280	790 bp upstream
Tssr25281	transcription start site region 25281	774 bp upstream
Tssr25282	transcription start site region 25282	704 bp upstream
Tssr25283	transcription start site region 25283	651 bp upstream
Tssr25284	transcription start site region 25284	434 bp upstream