rs33616687 SNP Detail

Summary

• ID
  rs33616687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34417095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CCAGAAGATG CCCCCCCCCG
  Y
  CCCCCGCCTG TGGGTCTTCA CGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39558043	mCV23316998	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss325370664	CHEV_17_34335066	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33616687					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34417095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9033	CpG island 9033	233 bp distal
Cpgi9034	CpG island 9034	38 bp proximal
D17Mit1001	DNA segment, Chr 17, Massachusetts Institute of Technology 1001	1640 bp proximal
Gm20496	predicted gene 20496	1195 bp downstream
Psmb8	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	74 bp upstream
Rr370230	regulatory region 370230	1409 bp downstream
Tap1	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	896 bp downstream
Tssr5093	transcription start site region 5093	360 bp downstream
Tssr143929	transcription start site region 143929	1263 bp downstream
Tssr143930	transcription start site region 143930	393 bp downstream
Tssr143931	transcription start site region 143931	58 bp upstream
Tssr143932	transcription start site region 143932	221 bp upstream
Tssr143933	transcription start site region 143933	264 bp upstream
Tssr143934	transcription start site region 143934	483 bp upstream