rs33616702 SNP Detail

Summary

• ID
  rs33616702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG ATCAGAATAC AGAAACCACA
  R
  GTATTCAGTT GAGCCTTATT CATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45800506	mCV22903036	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss144691540	ENSMUSSNP2299952	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss321718359	CHEV_5_149365179	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33616702					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490413 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	within coordinates
Cpgi17075	CpG island 17075	1978 bp distal
Cpgi17076	CpG island 17076	456 bp distal
Gm72666	predicted gene, 72666	238 bp upstream
Gm72684	predicted gene, 72684	within coordinates
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	952 bp distal
Rr625195	regulatory region 625195	324 bp distal
Rr625196	regulatory region 625196	786 bp distal
Rr625197	regulatory region 625197	within coordinates
Rr625198	regulatory region 625198	312 bp proximal
Rr625199	regulatory region 625199	591 bp proximal
Tssr49862	transcription start site region 49862	1210 bp downstream
Tssr54570	transcription start site region 54570	1922 bp upstream
Tssr54571	transcription start site region 54571	1480 bp upstream
Tssr54572	transcription start site region 54572	1382 bp upstream
Tssr54573	transcription start site region 54573	1330 bp upstream
Tssr54574	transcription start site region 54574	1175 bp upstream
Tssr54575	transcription start site region 54575	1086 bp upstream
Tssr54576	transcription start site region 54576	915 bp upstream
Tssr54577	transcription start site region 54577	760 bp upstream
Tssr54578	transcription start site region 54578	253 bp downstream
Tssr54579	transcription start site region 54579	390 bp downstream
Ubl3	ubiquitin-like 3	814 bp upstream