rs33617264 SNP Detail

Summary

• ID
  rs33617264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110432475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA GTCCATCAAG GCAGAGAAGT
  S
  AAGGCAACAG GAGGTTGAAG GATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45801185	mCV24965583	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss149050972	ENSMUSSNP4993333	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss321640287	CHEV_5_110713628	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33617264					SNP	C	C	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110432475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	1032 bp proximal
Pole	polymerase (DNA directed), epsilon	1710 bp upstream
Pxmp2	peroxisomal membrane protein 2	within coordinates
Rr399252	regulatory region 399252	within coordinates
Rr616864	regulatory region 616864	within coordinates
Rr616865	regulatory region 616865	1567 bp proximal
Rr616866	regulatory region 616866	1743 bp proximal
Tssr47885	transcription start site region 47885	1717 bp upstream
Tssr52499	transcription start site region 52499	1401 bp downstream
Tssr52500	transcription start site region 52500	1434 bp downstream
Tssr52501	transcription start site region 52501	1537 bp downstream
Tssr52502	transcription start site region 52502	1550 bp downstream