rs33617264 SNP Detail

Summary

• ID
  rs33617264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:110432475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA GTCCATCAAG GCAGAGAAGT
  S
  AAGGCAACAG GAGGTTGAAG GATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45801185	mCV24965583	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss149050972	ENSMUSSNP4993333	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss321640287	CHEV_5_110713628	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33617264					SNP	C	C	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110432475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pole	polymerase (DNA directed), epsilon			1710 bp upstream
Pxmp2	peroxisomal membrane protein 2			Intron
				Noncoding-Transcript-Variant
Rr399252	regulatory region 399252			within coordinates
Rr616864	regulatory region 616864			within coordinates
Rr616865	regulatory region 616865			1567 bp proximal
Rr616866	regulatory region 616866			1743 bp proximal
Tssr47885	transcription start site region 47885			1717 bp upstream
Tssr52499	transcription start site region 52499			1401 bp downstream
Tssr52500	transcription start site region 52500			1434 bp downstream
Tssr52501	transcription start site region 52501			1537 bp downstream
Tssr52502	transcription start site region 52502			1550 bp downstream