rs33619427 SNP Detail

Summary

• ID
  rs33619427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81007672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACAGGTAGT GCTCAAAATT ACAAATGGCA AAGTTTTTTT TTTTTAAAAT CATGAAAAAA
  AGGTCTATCT TCACCAGCCA TCAGAGAAAT GCAAGTCAAA ACTACCCTGA GTGAGATTTT
  ATCAGCAGTC TGAGTGTCAG CTATAAAGAA CACAAACACG GGTATCCAAT GCTGGCAGAA
  TGTGGACAAC AAGGAGGGAC CTTATCCACT GTGGGTGGGA TGGGAGTGTG AGCCAGTCCA
  GATTCTATGA GAATCTGAAT GGAGGTTTAT CACAGGACTT AAAATACCGG ACTGGAGAGA
  Y
  GGCACAGTCA GTGGTAAAGA GAACTTTCGG CTCCTCCAGA GGATCCACGT TTGGTTCCAG
  CACCCACACT GCAGCTCATC ATCGTCTGTA AGTCTAGTTC CAGGAGACCT GATGACCCCA
  GGTTGTCTTC CAGGGGAACC TGCGCACACA CGGTGCATAG ATACACATGC AGCCAAAACA
  TTCATACAAC ATAAAATAAA CTGAAAGCAA AATATATCCA TCACATGACC CAAACATGCC
  ATTCTTGGTA TTTTGTGAAA GGACTCCAAG TCAACACATC AGGAACTCAT TAGGTGTCTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39557979	mCV22619864	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146075159	ENSMUSSNP3108700	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33619427					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81007672 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	1529 bp proximal
Tssr149503	transcription start site region 149503	508 bp downstream
Tssr149504	transcription start site region 149504	1764 bp downstream