rs33619992 SNP Detail

Summary

• ID
  rs33619992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25402256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GAGAAGTTCA AGTCCAGTCC
  Y
  CCAGCAGAGG AGTTTCAAGT GAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39557792	mCV22798500	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145380164	ENSMUSSNP4900653	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325336537	CHEV_17_25320227	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33619992					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25402256 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	331 bp downstream
Cpgi8755	CpG island 8755	721 bp proximal
Rr370183	regulatory region 370183	1058 bp upstream
Rr523507	regulatory region 523507	18 bp proximal
Rr523508	regulatory region 523508	125 bp proximal
Rr523509	regulatory region 523509	782 bp proximal
Tssr5037	transcription start site region 5037	1276 bp upstream
Tssr143142	transcription start site region 143142	1282 bp upstream
Tssr143143	transcription start site region 143143	1328 bp upstream
Tssr146818	transcription start site region 146818	1100 bp downstream
Tssr146819	transcription start site region 146819	1122 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1279 bp upstream