rs33620325 SNP Detail

Summary

• ID
  rs33620325
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115078301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA ACAAAAACAA CACACACACA
  M
  AAAAAATGAA GTGTAGATCT GACCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45800648	mCV25153028	ABI	CRAMUS_MOUSE	f	SNP		C	A	A
ss149119405	ENSMUSSNP4972526	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss321653895	CHEV_5_115390251	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33620325					SNP	A	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115078301 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	1912 bp upstream
Cpgi16342	CpG island 16342	1815 bp proximal
Rr399277	regulatory region 399277	1806 bp upstream
Rr618069	regulatory region 618069	1099 bp proximal
Rr618070	regulatory region 618070	1463 bp proximal
Rr618071	regulatory region 618071	1940 bp proximal
Tssr48192	transcription start site region 48192	1934 bp upstream
Tssr48193	transcription start site region 48193	1974 bp upstream