rs33620463 SNP Detail

Summary

• ID
  rs33620463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121977648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACTAAGA GAATGGACAG GAAACCCAGC TAAGCCATTG
  TCCTTCCCCA AAACCCATGG ACAGAACAAA GAAAATTACC TAAATTTTTC AAGGGTACCC
  R
  ATTAAGTTCT CCATCCAAAG CTCTAAAAGG AGAAACCTGC TAGAAGCAAG GTCAGAAATC
  CTCTCAGTTG CCTTTAGGAC AGGAGGGTCT TTTTACACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45301129	mCV24434388	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147409988	ENSMUSSNP264835	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320487201	CHEV_2_121972903	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33620463					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121977648 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	520 bp upstream
Cpgi12169	CpG island 12169	425 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	261 bp upstream
Rr563912	regulatory region 563912	29 bp proximal
Rr563913	regulatory region 563913	530 bp proximal
Tssr19804	transcription start site region 19804	308 bp upstream
Tssr19805	transcription start site region 19805	513 bp upstream
Tssr19806	transcription start site region 19806	555 bp upstream
Tssr19807	transcription start site region 19807	1997 bp upstream
Tssr25953	transcription start site region 25953	210 bp upstream
Tssr25954	transcription start site region 25954	335 bp downstream