rs33621879 SNP Detail

Summary

• ID
  rs33621879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123828106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT GGTTCAGCGG TTAAGAGCAC
  S
  GACTGCTCTT CCAAAGGTCC TGAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46297884	mCV23468048	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss145824472	ENSMUSSNP538764	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		G
ss322854277	CHEV_8_125625267	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33621879					SNP	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123828106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	767 bp proximal
Rpl13	ribosomal protein L13	983 bp upstream
Rr382749	regulatory region 382749	352 bp downstream
Rr672353	regulatory region 672353	671 bp distal
Rr672354	regulatory region 672354	74 bp proximal
Rr672355	regulatory region 672355	493 bp proximal
Snord68	small nucleolar RNA, C/D box 68	1691 bp upstream
Tssr79911	transcription start site region 79911	977 bp upstream
Tssr79912	transcription start site region 79912	992 bp upstream
Tssr79913	transcription start site region 79913	1064 bp upstream
Tssr83335	transcription start site region 83335	893 bp downstream