rs33622178 SNP Detail

Summary

• ID
  rs33622178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132568570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT GGTGACACTC AATACTTGGC
  R
  CTCAGAGAAC CAACTCTAAA ATGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45800767	mCV23253988	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A	G
ss51199117	NES13819784	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G		G	A	G		A	G	G		G
ss144496906	ENSMUSSNP1466236	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss321694535	CHEV_5_133015601	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33622178					SNP	G	G	A	A	A	A	G	A	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51199117	NES13819784	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132568570 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	1664 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1222 bp proximal
Rr621808	regulatory region 621808	1508 bp proximal