rs33622239 SNP Detail

Summary

• ID
  rs33622239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCTTTAA TCCCAGCACT CAGGAGGCAG AGGCAGGAGA
  CCTCTTGTGA GCTTAAGGTT AGCTGATCTA CATAGTGAGA CCCTATCTCC AAAAAAAAAA
  S
  TGTAGATTGG AGAATTGGGG CAGTGCTAGG AATGGAACTC AAAGTTGAGT GTGTCTAGAG
  CACTAGACAA GTGTTCTGCC ATTGCGTTGA GACCCCTGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45300682	mCV25126957	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33622239					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			757 bp distal
Rr568378	regulatory region 568378			1954 bp proximal
Tssr21217	transcription start site region 21217			882 bp upstream