rs33622940 SNP Detail

Summary

• ID
  rs33622940
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12453068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCAGT GGTAGAGCAC
  TTGCCTAGAT TGTGCACAGA TCTGGAGTTC CATCCCCAAA CGATAAAGGA AGGAAGGAAG
  GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA ACTAAAATTT TAGCTCTATC CTTCTATCCT
  ATAAAATCTC TTTTGTCCAA CTAAACATTT AAAAGTTCAT CGGAAGAGGC ATTTCCCTAC
  M
  ATATATGCTA TACTCTTTCT TTACACTTTC CACATCCTCC ACTTACATAT TAAAATCATA
  TTCATCTTTC AAGGTCATCA ACTGAGAAGT TGTTTTCTAA CCACAGATTA TGGGCAATGT
  CACTTCTTGC CTTACATCAT AGGTAAGAGG CTATGAGCCA AGGGATGATT TTGGTCTAAT
  TAGTGTGTCT AGCCGTCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46836955	NES10962091	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33622940					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46836955	NES10962091	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12453068 () rs orientation: forward

Symbol	Name	Function Class
Atp6ap2	ATPase, H+ transporting, lysosomal accessory protein 2	972 bp upstream
Cpgi22626	CpG island 22626	617 bp proximal
Rr406087	regulatory region 406087	674 bp upstream
Rr690145	regulatory region 690145	482 bp proximal
Rr690146	regulatory region 690146	983 bp proximal
Rr690147	regulatory region 690147	1128 bp proximal
Tssr160561	transcription start site region 160561	962 bp upstream
Tssr160562	transcription start site region 160562	1035 bp upstream