rs33623686 SNP Detail

Summary

• ID
  rs33623686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAGGGAT CTGTCTCCTC
  CAAGGGAGGT TTCAGAATCT TCTTGGCTCA GACAATGAAG CTACGAGGGG AGAAGAGCCT
  TGACCGTGAA CATCCCAGTC CTGCATGTCC CTGAGCACTG ATATCCTGTG TGTCAGCTGG
  GCACATAGGA TTGTGCCTGA GAGGCAGAGT AGGAAAGTCA GTGAGCAGAC CCTGTCACTG
  Y
  ACTGTCCCTG CCTGTCTATC CACACAGGAG CTCCGAGAGT CCCACCCTAG AGACAAAATT
  AATTGCTAGT CCTAGCAATT CTGTACCTAC TCCTGCTCTC ATATCCAAAT CTCCCCCAAT
  TTTCTTTTTT GTTGTTGTTG CTATCTTGAG ACAAGGTTTC TCTGTGTAAC CTTGGTGACT
  TAGAACTCAC TATGTAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46298053	mCV25173030	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136420876	ENSMUSSNP5453279	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33623686					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863605 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1794 bp upstream
Gm68914	predicted gene, 68914	1055 bp downstream
Rr678012	regulatory region 678012	1304 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	552 bp downstream
Tssr89293	transcription start site region 89293	1366 bp downstream