rs33624212 SNP Detail

Summary

• ID
  rs33624212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72684973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGAAAA TGCCTTTCAG
  CTGGATCTCA TGGAGGCATT TCCTCAAGGG AAGCTCCTTT CCCTGTGATA ACTCCAGCTT
  GTGTCAAGTT GAAACACAAA AGCAGTCAGT ACAGTTTGAG GCTGTCAATA TAAGCATACC
  TTTAAAAATT CACCTTAATT ACAATGCAGC CCATACTTGT GATTCAGTGC ATTAATGTAA
  M
  CATGTTAAGA ACACCCGTTA GTGGACTGGA GAGATGGCTC AGTGGTTAAG AGCACTTCCA
  GAGGTCCTGA GTTCAATTCC CAACAACCAC CTGGTGGCTC ACACCCATCT GTAAAAGGAT
  CTGATGCCCT CTTCTGGTGT GTCTGAAGAT AGCTACAGTG TAATCATATA CATAAAATAA
  ATAATTCTTT TTAAAAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46298427	mCV23625296	ABI	CRAMUS_MOUSE	f	SNP		A						C		C
ss61421329	NES16805538	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33624212					SNP	A	A	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421329	NES16805538	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72684973 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	within coordinates
Gm68390	predicted gene, 68390	1090 bp downstream
Rr197250	regulatory region 197250	28 bp proximal
Rr197251	regulatory region 197251	428 bp proximal
Rr197252	regulatory region 197252	1828 bp proximal