rs33625174 SNP Detail

Summary

• ID
  rs33625174
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12455445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGAGTT CCAGGACAGC
  CAGGGCTACA CAGAGAAACC CTGTCTCAAA AAAAAAAAAA TCAACTGGAG AGCACCTTGG
  GGAGGAATGG GTGTTTTGTG TCAAAGAGAT ACCTTGTGCC TGTGCTGTGT GAGATGCTGG
  TCCTACTTTT GGAATGGCAG TTGAAGTGAA AAAGACCTAG TAATGGTTTT GAGCACCAAA
  S
  CTCTTCTCTG CCCTGGAGGT GCCCAGCCCT CTGTGTTAAT AGTTAACATA TATTTCAGGC
  CTCCAAAGTG TTAGGGTCTC CTTCATTGTT GTTGGTTCTG GAAAGGCCAT TCTGATTTAA
  TCAAGATACT TTGGGGATTT TTCAAGGTAC TTTGGTAACT GCTTGCCACA AAAGCATGAG
  GGCATGAGTT TAAACCCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46836979	NES10962047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33625174					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46836979	NES10962047	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12455445 () rs orientation: forward

Symbol	Name	Function Class
Atp6ap2	ATPase, H+ transporting, lysosomal accessory protein 2	within coordinates
Cpgi22626	CpG island 22626	1117 bp distal
Rr406087	regulatory region 406087	1402 bp downstream
Rr690145	regulatory region 690145	1395 bp distal
Rr690146	regulatory region 690146	654 bp distal
Rr690147	regulatory region 690147	1228 bp distal
Tssr160561	transcription start site region 160561	1360 bp downstream
Tssr160562	transcription start site region 160562	1329 bp downstream