rs33625685 SNP Detail

Summary

• ID
  rs33625685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25651628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA ACTACCTTTC ATTTCCTTCC
  R
  CCGGCGGCAT CCTCGCCGCT TCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39558893	mCV22731861	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss145388718	ENSMUSSNP3083108	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss325337872	CHEV_17_25569599	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33625685					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25651628 () rs orientation: forward

Symbol	Name	Function Class
Cacna1h	calcium channel, voltage-dependent, T type, alpha 1H subunit	within coordinates
Cpgi8763	CpG island 8763	within coordinates
Gm65272	predicted gene, 65272	1040 bp upstream
Rr523569	regulatory region 523569	222 bp proximal
Rr523570	regulatory region 523570	614 bp proximal
Rr523571	regulatory region 523571	1119 bp proximal
Rr523572	regulatory region 523572	1414 bp proximal
Rr523573	regulatory region 523573	1580 bp proximal
Rr523574	regulatory region 523574	1710 bp proximal
Tssr146839	transcription start site region 146839	609 bp downstream
Tssr146840	transcription start site region 146840	900 bp downstream
Tssr146841	transcription start site region 146841	957 bp downstream
Tssr146842	transcription start site region 146842	1088 bp downstream
Tssr146843	transcription start site region 146843	1121 bp downstream