rs33625796 SNP Detail

Summary

• ID
  rs33625796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12518528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCATAA GCCGCCACTT
  TCCTTGCCAA AAGCCTCAAG TCAGCTGAGG ACGTCAACTG AGCACGTCAG CAGCGCGTGA
  ACTGGTGTCC TTTATGGCAG AGGCGCAAAA GCACAAAGCG GCTGCTGCGT CAGGGTCTTC
  TGTGAGGTCC GCATTTCTGT GCTCATTTGG TGGCTGGCAG CTTGGCTGTA GGCACTTCTC
  Y
  GACTGAGGCG ACCATGGCAG CAGTAGCAGC GCTAATGCGG AAAACGCTAG ATTATCTTAA
  GACCAAGGAG TTTCGGGATT ATATAACCAG CACCCACTTC TGGGGTCCTG TGGCCAACTG
  GGGCCTTCCG CTGGCCGCCT TTAAGGATAT GAAGGCGCCT CCCGACATCA TCAGCGGCCG
  CATGACGACC GCCCTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46837324	NES10986451	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33625796					SNP	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837324	NES10986451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12518528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	within coordinates
Gm4984	predicted pseudogene 4984	14 bp upstream
Rr2753	regulatory region 2753	528 bp distal
Tssr160565	transcription start site region 160565	48 bp downstream
Tssr160566	transcription start site region 160566	27 bp downstream
Tssr160567	transcription start site region 160567	3 bp downstream