rs33625799 SNP Detail

Summary

• ID
  rs33625799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12519700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTTCTG GGCTCAGGAT
  GGTTGCTGTC AATTCAGCAA GTTCTAGGAA AACATGCCCA AATTATAATG CTTTCCCTTT
  AAAGTGGGAA ACTACAGGAG TTTGTGCAGT TGCTAAGCCC TGCCCCAGGG TTAACTAGCT
  AGGGATGGGG TGGGGGGGTG AGGGTCACTG GTCAGCAGCT CAGAGTATCC CCTAGGAATT
  Y
  TCTGGGTGCC AATGATGTAT TAAACCGAAA AGCTTGTAAA GAGGGAAGAC CGATGTTGTG
  AGGTAGGATC ATTATAGCTA GGACAAGCTG TCCCCTGGGG TTTGATCCAC ACGGGCCTTG
  CCTAGGATTC TGCTGAATAC AGGAAAGCCC ATGTGGTTTT GGGGGGACTC AATACACATA
  TTCACAAGTG CTGAACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss46837327	NES10986453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs33625799					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837327	NES10986453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12519700 () rs orientation: forward

Symbol	Name	Function Class
1810030O07Rik	RIKEN cDNA 1810030O07 gene	1418 bp downstream
Cpgi22627	CpG island 22627	880 bp distal
Gm4984	predicted pseudogene 4984	799 bp downstream
Rr2753	regulatory region 2753	1700 bp distal
Tssr160565	transcription start site region 160565	1220 bp downstream
Tssr160566	transcription start site region 160566	1199 bp downstream
Tssr160567	transcription start site region 160567	1175 bp downstream