rs33626838 SNP Detail

Summary

• ID
  rs33626838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50673968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTCCAGG AATGCAAAGT GTAAGCTATG CTGGGCTTTT
  CAGATTTGCC ACTGATAGAA AGCGGAGAGG AGTGTTTGAC TAGGAGACAT AGGGTTTTGT
  Y
  TGGAGACTGG ATCATGCTCT GTAGTCTACT ATATAGCCCA TAGGCAGGTC TCAAATTCCG
  GGCTATGCTC CTGCCTCAGC CTCCTGATTG TTCTATATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46299000	mCV25205984	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136481041	ENSMUSSNP5046328	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss322959952	CHEV_9_50570773	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33626838					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50673968 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	mRNA-UTR
Gm67659	predicted gene, 67659	448 bp upstream
Rr678731	regulatory region 678731	771 bp proximal
Rr678732	regulatory region 678732	860 bp proximal