rs33626998 SNP Detail

Summary

• ID
  rs33626998
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115060676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCATTA AAAAGCAAAA
  CAAACAAACA AACAAACAAA CAAACAAAAC CCCACTACTT GAAGTTCTAT TTCTGGGGCT
  TGGTAAAAGC CACTGTCTGT GACAGGACTA GGGACACATG TCACCCTGAC ACAAGGATGC
  TTAGCTCCCC TTGATGCACT TCCTTCCGGT CCATCACTTG ATTACAGATG CCCATTCCCT
  K
  TTTCCTTGCC TGGTGGCTGA ACGGTGGCAT TCCTCCTGTG GCATCTGTCC TCGGACACAC
  TGTGATGGAC ACCTGCCAAA AAGCCTTCAC TGGGTAGGCA GGCTTCCACA TCATTGGTCT
  GTGTGCCTCC TCCCTTCACC CCCAAGGTGA CTCTGAGTCT TCATCCAGCC AACCTCTCTC
  TTTTAGCCCC TCTGTCCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46299189	mCV23362034	ABI	CRAMUS_MOUSE	f	SNP		G	T				T
ss61227466	NES16843216	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T		T	T	T	T	T	T	T	G
ss137004589	ENSMUSSNP2440786	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33626998					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227466	NES16843216	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115060676 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	1268 bp upstream
Osbpl10	oxysterol binding protein-like 10	within coordinates