rs33627256 SNP Detail

Summary

• ID
  rs33627256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47016132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAACCTG CCTGAGAACC
  AGGAGCCGCC TCCTCGGATT GGTCATTGGA GCCAAGCAGC TTCCCTTTTT TCTCATTGGA
  AAGAAAGAGT ACAAACCGCC AGGGTTCGGC TCCCAGAATT GGCTGGAGTG GAAGGTCCCG
  CCCTGAAAAG GGTCGGGCTT CGTGGAGGAG GCGGAGCCAT GGGGAAACCC GAGCTTGGCT
  R
  GCAGATCTGT TCTCCGGCGT CGCCTTGTGC GTCGTCCTCT GCTATTCTTC AGTCCTTTGA
  GCTCTGCTCC TTCCCTCCAG AAGTGGCTCT CATGTTCTCC CCTGCTCTTC TACCTGCCCT
  GCTTCGTACG GACTGGAGGA AAAAGGCCCT AACACGAAAA GGGCACCTTT CTTCACAGGA
  ATTTAAAGTA GCTCAAATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39559344	mCV22794290	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss145701140	ENSMUSSNP6701914	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33627256					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47016132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	within coordinates
Gm65134	predicted gene, 65134	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	180 bp upstream
Rr370260	regulatory region 370260	within coordinates
Tssr148375	transcription start site region 148375	206 bp upstream
Tssr148376	transcription start site region 148376	193 bp upstream