rs33627646 SNP Detail

Summary

• ID
  rs33627646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99512831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCAGGC CTTTAATACA
  GTTCCTCATG TTATAGTGAT TCCCCCAGCC ATAAAGTTAT TTCATTCTGC TTCATAACTG
  TAATGTCGTT ACGGTTATGA ATTGTTAATG TAAATATCGG ACATGAAAAA TACCTGAGAT
  TCCTCGGGGG TCGCGACCCA CAGGTTGAGA ACCACTGTTT TAGCTGCATG CCTTAAATTG
  R
  GAACAGAAAT CTTGTGCATT TGGGAGCTGA ACTTCTTTTG TTTGTGCCAC TCAGAACACT
  TCAGAGGAGA AGGGGAGCCC TTGGTAGGCA GTTCTGAATG TCCTGTGCTC ACTTTGCAGA
  AGAGGAAGCT GTGGGCTAGC CAACCACTTG CCCCAACACT GGCCAGTCAC TTGCTTGGTG
  ATTGTAGTGA CGGGGTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46298649	mCV22647478	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss61443437	NES16824723	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A		G	A	A	A		A	G	G	G		G
ss323136091	CHEV_9_99531197	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33627646					SNP	A	A	G	A	G	A	A	G	?	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443437	NES16824723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99512831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	657 bp distal
Dzip1l	DAZ interacting protein 1-like	within coordinates
Gm68333	predicted gene, 68333	within coordinates
Rr206941	regulatory region 206941	within coordinates
Tssr86687	transcription start site region 86687	1186 bp downstream
Tssr86688	transcription start site region 86688	925 bp downstream
Tssr86689	transcription start site region 86689	902 bp downstream
Tssr86690	transcription start site region 86690	1865 bp upstream