rs33629533 SNP Detail

Summary

• ID
  rs33629533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11986436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCCTT GTGGACTGTT
  TTCTTTCCTT GGGTGAGAAG TTGGCTACCT GTGGACATGA AATGATCTAG ATATTTGGGT
  AGCTTCTCTG ACCTTCCCTG TTGTTGCCAC AGGAACGAAA ATTTCCTGTT CTTGCTCAGT
  TTAGTCCTTG ACATTTTAAA CAGAGGGCGT GCACCTCGGC CGCTTGACCC TTGTTTACAG
  Y
  AATTAAAAAA AAAAAAAAAG GTGCTCCTGT TATATCACTT CATCATGGAC CAGTAAGGTC
  AGGTCCCTAA GTAACATTTC AGGGTTGCCT AGAACTGTGT TCCCAGCAAG GAAGGCTCCT
  CAGAAGCATT TGGCAAGGGG ATGAATAACT TAAACAAATC AAAACAAAAC TAAGACCTTC
  AGGAAGCTCA CTCTGACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39559530	mCV22930665	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145165263	ENSMUSSNP990577	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss325300439	CHEV_17_11960415	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33629533					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11986436 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334163	regulatory region 334163	836 bp distal
Rr334164	regulatory region 334164	1365 bp proximal