rs33630006 SNP Detail

Summary

• ID
  rs33630006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46965235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCAAGA TAATTTTTGA
  AAGAATCTGT GCCAAACCAA GAGTAATAAC AATAACAATA AACTGTTGGG AGTTCAAAGA
  GTAAACTAAA ATAGGGACCA GAGGAAACTG TCTTTGTTTT GTCCAACTAA TAGCTGTGAA
  GAGCTGGCTC CTTGTACCAA AGCCTCTTCA AAAGTGCCTA GACTTCTCTC TGGTTGGCTG
  Y
  AGGGCTATTT CCCAAGGGAA AGATTTTCCA CAGCATCAGT CATCTGGTTT ATAAACAGAT
  GGCACAGGTC TTTTACTTTT TAGAGAAAGA TCAATAATCT GTCAACTGTA AGATTCTACA
  GCCCAATGTA TTTTTATTGA TAAGCATTCA CAATGACTCA GTCTTCCCGC TCTAGATCCA
  TTTAAGACAA GGAGACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47322051	NES11090308	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33630006					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322051	NES11090308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46965235 () rs orientation: forward

Symbol	Name	Function Class
Rr410623	regulatory region 410623	878 bp distal
Tssr11557	transcription start site region 11557	303 bp upstream
Tssr11558	transcription start site region 11558	271 bp upstream