rs33630072 SNP Detail

Summary

• ID
  rs33630072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24306944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTATATC TTTCCTGGTT
  TTTATGCTGA AATAGCTGTG AATGGCTGGC TTCTTTATTA AAATGCATCT CTTTTCATAT
  TTGTGTTCTT TTTGTGTAAC CTTTTTGAGA TCTACAGAAT TGATGATTTG AGATTGCAAG
  TGTCTTTGAT GTGTACCTCT AGTGGTAATT AAATCGAACT CACTGGTGCT TAAATTTGTT
  Y
  AAGCTCATTC TGGTATACTC CTACTGTCCC GAACTGTGGC AGATGTGGGC TGGAGCTTTG
  CAAAGCATTA CCTCATTCCT TAGATAGGCT GCAACAAAGT CACAGCATCC ATCAGGTGTT
  ACAAGAAGAT GGTCTGAACC AACATGTTAT TTAGTTCTTT GATTTTAAAA TTAATTCATA
  TTTCTTAGAC TTAGCTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45802431	mCV23730602	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33630072					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24306944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	624 bp distal
Gm71592	predicted gene, 71592	1450 bp upstream
Klhl7	kelch-like 7	within coordinates
Rr377704	regulatory region 377704	764 bp upstream
Rr398996	regulatory region 398996	1214 bp downstream
Tssr45399	transcription start site region 45399	1277 bp downstream
Tssr45400	transcription start site region 45400	1248 bp downstream
Tssr50303	transcription start site region 50303	1461 bp upstream