rs33630643 SNP Detail

Summary

• ID
  rs33630643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12516205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAAAA AAAAAAAAAA
  AAAAAAAAGA AGAAAAAAAA AAAGAATGCC TGTCACTCTT CCAGAGGTCC TGAGTTTAGT
  TCTCAAACAC TCATGTCTAG TGGCTGACAA CACCCATAAA TCAAGCTCCA GGTGATCAGA
  CACCTTTTTC TGGGCTCTAT AGGCCCAGTA CACAATTAGG CACATGTATA CCTGTGCATA
  Y
  GATAAGTCAT CAGAGAAAAG AATTTTCATT AACACATGTC AAAAACGTGT AATAGAGATT
  TGACTCAAGA CGGTGGTGGC CACTGGTACC GGAGGAACTG CAGAGCCCTC AGTATCACCA
  GAACTAAAAA GCTAGGTCTT ATAAGAAGAT GCTTTTAGAA ACTGGACTCA TGAAATTGGA
  AGGCAAGATG GCTGAGACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	WSB/EiJ
ss46837291	NES10986574	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	WSB/EiJ
rs33630643					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837291	NES10986574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12516205 () rs orientation: forward

Symbol	Name	Function Class
Rr2752	regulatory region 2752	405 bp distal
Rr2753	regulatory region 2753	1596 bp proximal