rs33631396 SNP Detail

Summary

• ID
  rs33631396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122297524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTGTC CGACTTGGGG
  GTTTCTGCCG TGTGGTTTCC TACTTTGGAG ATTTCAAATT TGACATAGGT CTGGATCCTG
  CTAATCACAG ATCCCACAAC ATCCGCTGAA GCTAAAGAGG AGAAGATCCA GTAACCTTGA
  TTTGGGCTCT TGACACTAGC TTGCTTTGGC CCAAAATACT TTTGGAGTGG TGGACAGCTG
  Y
  GCAATTCTGG TGGTAGATGT CTTCAAGTAA ATCACTGACA GAAAAGGGAA AAGGTGTCTT
  TTTAAAATCT GGGCATTTCC CCGGGGGGCG GGGGGGTGTT TTTCAAGACA GGGTTTCTCA
  GTATGGTCCT GGGGCTGTCC TGGAACTCAC TCTGTAGAGC AGGCTGGCCT CAAACTCAGA
  AATCCGCCTG CCTCTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45802633	mCV22536797	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149186885	ENSMUSSNP4356920	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321668912	CHEV_5_122609470	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33631396					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122297524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	352 bp distal
Gm73495	predicted gene, 73495	1395 bp upstream
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	within coordinates
Rr124301	regulatory region 124301	within coordinates
Rr124302	regulatory region 124302	1876 bp proximal
Tssr48638	transcription start site region 48638	1121 bp downstream