rs33632099 SNP Detail

Summary

• ID
  rs33632099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46966149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAGTAT TGAGACCATC
  CAGAAAACAA TCAGTATAAT TTCTGTGACT GAAGAAAAAA AAATCTGTTA CCCTCAATCC
  ATCTATTCTC AGGGTTATAG AGACAGGGTA AATCCTTTCT TTATTTACCT CTCATTTAAA
  TAGTATTCAG TCAGATGGCT GGATACCTGT ATGCATCATA TGAGCAGGAA TTCAAAGACC
  Y
  GCCTGTCCAG TTTTCTTCAG AGGTTTGGTT GGACTTCTGT AAAAAACACA CAACATTTCT
  TTTCCTAATG GAAAAGCAAC TGTTGAGAAT TGAAAACTTC TCTCCAGTAA ATACCCTAAC
  AGTCTAGAGG GTGGAGGGGT TCCCTACATT CTGTTAGACA TCAGAAGAAG ATGGATCATG
  TGAAGTGAAA TTCTTCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47322081	NES11090318	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33632099					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322081	NES11090318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46966149 () rs orientation: forward

Symbol	Name	Function Class
Rr410623	regulatory region 410623	1792 bp distal
Tssr11557	transcription start site region 11557	1217 bp upstream
Tssr11558	transcription start site region 11558	1185 bp upstream