rs33632255 SNP Detail

Summary

• ID
  rs33632255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12517301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGTAT ATGCTCCAGT
  GAGAATATGG GCAACCCAAA TTGGACTTGG TATATATATA TATTTTTTTC TTTTTTGGTG
  AAAGGCAGAC CTGGAAGGAA TGGGAAACAA GTGTGATGAG GTGCATTGTG TGAAATTCCC
  AAATAGTCAA TAAAAATATT ATGTTAGAAA AAACTGTTAT AGAAAGCTGT TGGAGAATAC
  R
  GTACCCATAT ATTATCAAAA TGTCTAAGAT TATTTGATTC ATGAAGGAAA AAAAAGTCTC
  CAGCTTCCCA CAACACCAAG CATCTTCCTG GTGATGCATT AGAGACACAA TAGAACTTGG
  TGTTGCTTCT CTTGTTTTAC AAATATGAGG GTTTTTTCAT AACTGAGTTA TTTTTAAAAT
  CCACAAAACT AAATTAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46837303	NES10986536	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33632255					SNP	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837303	NES10986536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12517301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	1205 bp proximal
Gm4984	predicted pseudogene 4984	1241 bp upstream
Rr2752	regulatory region 2752	1501 bp distal
Rr2753	regulatory region 2753	500 bp proximal
Tssr160565	transcription start site region 160565	1176 bp upstream
Tssr160566	transcription start site region 160566	1186 bp upstream
Tssr160567	transcription start site region 160567	1210 bp upstream